GGobi for Mac
If you need to run GGobi or rggobi on Mac, we will use Fink to deploy GGobi and rggobi.
- Prerequisite:
- Download and Install "XQuartz"
- Download and Install "Xcode"
- Open a terminal window and run "sudo xcode-select --install" to install Xcode Command Line Tools.
- Install "Java 6 for OS X 2015-001 10.7+") (run "java -version" to verify if you have "java version 1.6.0_65" installed)
- Download "Install Fink.tool" script from "helper script" link over http://www.finkproject.org/download/srcdist.php.
- Change "Install Fink.tool" to executable by "chmod +x Install\ Fink.tool".
- Run "./Install\ Fink.tool" to setup and install Fink. You can leave the prompting questions as default answers by simply pressing "Enter" key.
- After the Fink installations are completed, run following to set the terminal session environment depending on the command shell you are using.
- /sw/bin/init.sh or /sw/bin/init.csh
- Run following command if you want to allow Fink's unprivileged user to build packages. (Optional)
- sudo xcodebuild -license
- Make Fink selfupdate use rsync to update its package list by running.
- fink selfupdate-rsync
- Update Fink packages:
- fink update-all
- Install GGobi package:
- fink install ggobi
- To run GGobi by entering "/sw/bin/ggobi" or "ggobi" (if "ggobi" doesn't work, you will need to run "/sw/bin/init.sh" or "/sw/bin/init.csh")
- Install rggobi and specific R software built from source: (ex. R-3.4)
- fink install cran-rggobi-r34
- To run rggobi from R: (If "R-3.4" doesn't work, you will need to run "/sw/bin/init.sh" or "/sw/bin/init.csh")
- /sw/bin/R-3.4 or R-3.4
- Run rggobi from RStudio: (You will need to run from terminal window)
- Set RSTUDIO_WHCIH_R environment variable to the R executable file (ex. /sw/bin/R-3.4)
- export RSTUDIO_WHICH_R=/sw/bin/R-3.4
- Run RStudio from command line
- open /Applications/RStudio.app
- Set RSTUDIO_WHCIH_R environment variable to the R executable file (ex. /sw/bin/R-3.4)